Ciência habilitada por dados de espécimes

Streiff, S. J. R., E. O. Ravomanana, M. Rakotoarinivo, M. Pignal, E. P. Pimparé, R. H. J. Erkens, and T. L. P. Couvreur. 2024. High-quality herbarium-label transcription by citizen scientists improves taxonomic and spatial representation of the tropical plant family Annonaceae. Adansonia 46. https://doi.org/10.5252/adansonia2024v46a18

Herbarium specimens provide an important and central resource for biodiversity research. Making these records digitally available to end-users represents numerous challenges, in particular, transcribing metadata associated with specimen labels. In this study, we used the citizen science initiative ‘Les Herbonautes’ and the Récolnat network to transcribe specific data from all herbarium specimen labels stored at the Muséum national d’Histoire naturelle in Paris of the large tropical plant family Annonaceae. We compared this database with publicly available global biodiversity repository data and expert checklists. We investigated spatial and taxonomic advances in data availability at the global and country scales. A total of 20 738 specimens were transcribed over the course of more than two years contributing to and significantly extending the previously available specimen and species data for Annonaceae worldwide. We show that several regions, mainly in Africa and South East Asia not covered by online global datasets, are uniquely available in the P herbarium, probably linked to past history of the museum’s botanical exploration. While acknowledging the challenges faced during the transcription of historic specimens by citizen scientists, this study highlights the positive impact of adding records to global datasets both in space and time. This is illustrative for researchers, collection managers, policy makers as well as funders. These datasets will be valuable for numerous future studies in biodiversity research, including ecology, evolution, conservation and climate change science.

Tulowiecki, S. J., and N. LaDuke. 2024. Models reveal shifting distribution of climatic suitability for pawpaw (Asimina triloba [L.] Dunal) cultivation under future climate change scenarios. Scientia Horticulturae 338: 113837. https://doi.org/10.1016/j.scienta.2024.113837

The pawpaw (Asimina triloba [L.] Dunal) is a deciduous tree notable for its large edible fruit. Native to the eastern US and Canada, it has earned attention as a horticultural commodity and focus of scientific inquiry. However, few studies have modeled its potential future distribution under climate change. This study predicted the current and future potential distribution for pawpaw in North America and globally, with a focus on understanding future climatic suitability for fruit cultivation. This study first modeled suitability via the Maximum Entropy (MaxEnt) method by relating climate predictors with different datasets on pawpaw distribution, including nursery locations growing pawpaw. It also trained a boosted regression tree (BRT) model to estimate where sufficient heat accumulation for fruit ripening would occur. The models were applied to two future times (2041–2060 and 2081–2100), four emissions scenarios (SSP126, SSP245, SSP370, and SSP585), and climate projections from three climate models. Using nursery locations, the MaxEnt model yielded a mean area-under-the-curve statistic of 0.978 (standard deviation = 0.009) using 10-fold cross-validation, indicating strong predictive performance. The model suggested optimal conditions for pawpaw at these values: -4 °C for minimum temperature of coldest month, 26 °C for maximum temperature of warmest month, 88 cm for annual precipitation, and 0 % for precipitation seasonality. Models suggested shifting suitable climate conditions and accompanying increases in heat accumulation for fruit ripening. Northern America, Eastern Europe, and Northern Europe were predicted to have higher and increasing suitability; Western Europe, Southern Europe, and Eastern Asia were predicted to have higher but decreasing suitability. Little uncertainty existed due to collinearity shift or dissimilarity between current and future climate, but more uncertainty existed when predictions were based on differing climate model projections. This study provides insight into the pawpaw's potential response to climate change, and guidance on future locations for cultivation.

Reichgelt, T. 2024. Linking the macroclimatic niche of native lithophytic ferns and their prevalence in urban environments. American Journal of Botany 111. https://doi.org/10.1002/ajb2.16364

Premise Vertical surfaces in urban environments represent a potential expansion of niche space for lithophytic fern species. There are, however, few records of differential success rates of fern species in urban environments.MethodsThe occurrence rates of 16 lithophytic fern species native to the northeastern USA in 14 biomes, including four urban environments differentiated by percentage of impervious surfaces, were evaluated. In addition, the natural macroclimatic ranges of these species were analyzed to test whether significant differences existed in climatic tolerance between species that occur in urban environments and species that do not.ResultsThree species appear to preferentially occur in urban environments, two species may facultatively occur in urban environments, and the remaining 11 species preferentially occur in nondeveloped rural environments. The natural range of fern species that occur in urban environments had higher summer temperatures than the range of species that do not, whereas other macroclimatic variables, notably winter temperatures and precipitation, were less important or insignificant.ConclusionsVertical surfaces in urban environments may represent novel niche space for some native lithophytic fern species in northeastern USA. However, success in this environment depends, in part, on tolerance of the urban heat island effect, especially heating of impervious surfaces in summer.

Shirey, V., R. Khelifa, L. K. M’Gonigle, and L. M. Guzman. 2022. Occupancy–detection models with museum specimen data: Promise and pitfalls. Methods in Ecology and Evolution. https://doi.org/10.1111/2041-210x.13896

1. Historical museum records provide potentially useful data for identifying drivers of change in species occupancy. However, because museum records are typically obtained via many collection methods, methodological developments are needed in order to enable robust inferences. Occupancy‐detection models, a relatively new and powerful suite of statistical methods, are a potentially promising avenue because they can account for changes in collection effort through space and time.

Xue, T., S. R. Gadagkar, T. P. Albright, X. Yang, J. Li, C. Xia, J. Wu, and S. Yu. 2021. Prioritizing conservation of biodiversity in an alpine region: Distribution pattern and conservation status of seed plants in the Qinghai-Tibetan Plateau. Global Ecology and Conservation 32: e01885. https://doi.org/10.1016/j.gecco.2021.e01885

The Qinghai-Tibetan Plateau (QTP) harbors abundant and diverse plant life owing to its high habitat heterogeneity. However, the distribution pattern of biodiversity hotspots and their conservation status remain unclear. Based on 148,283 high-resolution occurrence coordinates of 13,450 seed plants, w…

de Oliveira, M. H. V., B. M. Torke, and T. E. Almeida. 2021. An inventory of the ferns and lycophytes of the Lower Tapajós River Basin in the Brazilian Amazon reveals collecting biases, sampling gaps, and previously undocumented diversity. Brittonia 73: 459–480. https://doi.org/10.1007/s12228-021-09668-7

Ferns and lycophytes are an excellent group for conservation and species distribution studies because they are closely related to environmental changes. In this study, we analyzed collection gaps, sampling biases, richness distribution, and the species conservation effectiveness of protected areas i…

Mason, C. M., M. C. LaScaleia, D. R. De La Pascua, J. G. Monroe, and E. W. Goolsby. 2020. Learning from Dynamic Traits: Seasonal Shifts Yield Insights into Ecophysiological Trade-Offs across Scales from Macroevolutionary to Intraindividual. International Journal of Plant Sciences 181: 88–102. https://doi.org/10.1086/706238

Premise of the Research. Phylogenetic comparative methods provide a powerful approach for exploring the macroevolution of plant functional traits. Such approaches can uncover trait-trait correlations through evolutionary time, as well as provide evidence of the role of traits in adaptation across en…

De La Pascua, D. R., C. Smith‐Winterscheidt, J. A. Dowell, E. W. Goolsby, and C. M. Mason. 2020. Evolutionary trade‐offs in the chemical defense of floral and fruit tissues across genus Cornus. American Journal of Botany 107: 1260–1273. https://doi.org/10.1002/ajb2.1540

Premise: Defense investment in plant reproductive structures is relatively understudied compared to the defense of vegetative organs. Here the evolution of chemical defenses in reproductive structures is examined in light of the optimal defense, apparency, and resource availability hypotheses within…

Cross, A. T., T. A. Krueger, P. M. Gonella, A. S. Robinson, and A. S. Fleischmann. 2020. Conservation of carnivorous plants in the age of extinction. Global Ecology and Conservation 24: e01272. https://doi.org/10.1016/j.gecco.2020.e01272

Carnivorous plants (CPs)—those possessing specific strategies to attract, capture and kill animal prey and obtain nutrition through the absorption of their biomass—are harbingers of anthropogenic degradation and destruction of ecosystems. CPs exhibit highly specialised and often very sensitive ecolo…

Lindelof, K., J. A. Lindo, W. Zhou, X. Ji, and Q. (Jenny) Xiang. 2020. Phylogenomics, biogeography, and evolution of the blue‐ or white‐fruited dogwoods (Cornus)—Insights into morphological and ecological niche divergence following intercontinental geographic isolation. Journal of Systematics and Evolution 58: 604–645. https://doi.org/10.1111/jse.12676

The eastern Asian (EA)–eastern North American (ENA) floristic disjunction represents a major pattern of phytogeography of the Northern Hemisphere. Despite 20 years of studies dedicated to identification of taxa that display this disjunct pattern, its origin and evolution remain an open question, esp…